Hey man, wlecome to the club. Get it breathing better first, Intake and Exhaust are two great starter mods. You can hook up a cold air intake (CAI) for next to nothing if you do it yourself. Just go down to Autozone and buy the CAI kit they have it'* for Hondas but with very little work it can be made to fit. If you prefer prefab surf on over to Intense racing .com They got a couple different designs pick the one that suits you best.
for exhaust mods I went with Flowmaster 40 series give the car more of a performance sound.
Then go with intense racing pcm(powertrain control module). The have several different stages, the standard pcm is what I have and I love it. Drop in at lest a 180* thermostat. The go with rockers and springs and a smaller pully for your supercharger.
The Bonnys have a great platform to work with.
If you have questions don't be afraid to ask
Once again welcome to the club
02 Se with a few mods,
Coming Soon 1.9'* OR pushrods and other stuff