There are more incompatibilities than I can go into right now, and there is no written guide. There are currently only two cars running with the swap on this Forum, and neither is a PERFECT example of a seamless swap. Both have had their issues, but do run. Just not at their full potential.
A few have tried, and only these two have succeeded in any way. One runs full-time with an AFC calibrator (which has issues of it'* own) and the other runs full-time with a Walbro 255 fuel pump and an adjustable FPR jacked all the way up. There are other issues to overcome as well. And there are still unanswered questions about how the fuel injectors are managed, why the fuel pressure is rated differently, if the 'older' style EGR is even sufficient to give what the PCM demands based on flow....and on and on and on.
At this point, I wouldn't suggest it as an option unless you were already 2-3 years into modding and familiarity with scanning/repairing/deeply understanding your car.
Yes, I own one of the two cars I mention. John Wikoff (Moderator) has the other. And I can tell you that in my experience (also owning a 95 supercharged), you're much better off selling the car and buying a newer one than going through all the headaches. I didn't upgrade for more power, it was more of a situation where I was trapped in an 'untunable' state through other mods, and it was a prime opportunity to try it out. I have the luxury of a 'toy' car, and a daily driver.